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Phys. Rev. E 84, 011914 (2011) [11 pages]

Motor-driven dynamics of cytoskeletal filaments in motility assays

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Shiladitya Banerjee1, M. Cristina Marchetti2, and Kristian Müller-Nedebock3
1Physics Department, Syracuse University, Syracuse, New York 13244, USA
2Physics Department & Syracuse Biomaterials Institute, Syracuse University, Syracuse, New York 13244, USA
3Institute of Theoretical Physics/Department of Physics, Stellenbosch University, Matieland 7602, South Africa

Received 17 April 2011; revised 1 June 2011; published 18 July 2011

We model analytically the dynamics of a cytoskeletal filament in a motility assay. The filament is described as rigid rod free to slide in two dimensions. The motor proteins consist of polymeric tails tethered to the plane and modeled as linear springs and motor heads that bind to the filament. As in related models of rigid and soft two-state motors, the binding and unbinding dynamics of the motor heads and the dependence of the transition rates on the load exerted by the motor tails play a crucial role in controlling the filament’s dynamics. Our work shows that the filament effectively behaves as a self-propelled rod at long times, but with non-Markovian noise sources arising from the coupling to the motor binding and unbinding dynamics. The effective propulsion force of the filament and the active renormalization of the various friction and diffusion constants are calculated in terms of microscopic motor and filament parameters. These quantities could be probed by optical force microscopy.

©2011 American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevE.84.011914
DOI:
10.1103/PhysRevE.84.011914
PACS:
87.16.Nn, 87.16.ad, 87.16.Ln, 87.10.Mn