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Phys. Rev. E 77, 023901 (2008) [3 pages]

Comment on “Regularizing capacity of metabolic networks”

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Petter Holme1 and Mikael Huss2
1Department of Computer Science, University of New Mexico, Albuquerque, New Mexico 87131, USA
2School of Computer Science and Communication, Royal Institute of Technology, 10044 Stockholm, Sweden

Received 26 April 2007; published 4 February 2008

In a recent paper, Marr, Müller-Linow and Hütt Phys. Rev. E 75 041917 (2007)] investigate an artificial dynamic system on metabolic networks. They find a less complex time evolution of this dynamic system in real networks, compared to networks of null models. The authors argue that this suggests that metabolic network structure is a major factor behind the stability of biochemical steady states. We reanalyze the same kind of data using a dynamic system modeling actual reaction kinetics. The conclusions about stability, from our analysis, are inconsistent with those of Marr et al. We argue that this issue calls for a more detailed type of modeling.

© 2008 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevE.77.023901
DOI:
10.1103/PhysRevE.77.023901
PACS:
82.39.−k, 05.45.−a, 89.75.Kd

See Also

Original Article: Carsten Marr, Mark Müller-Linow, and Marc-Thorsten Hütt, Regularizing capacity of metabolic networks, Phys. Rev. E 75, 041917 (2007).