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Phys. Rev. E 77, 020802(R) (2008) [4 pages]

Kinetically driven helix formation during the homopolymer collapse process

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Sid Ahmed Sabeur1, Fatima Hamdache1, and Friederike Schmid2
1Département de Physique, Faculté des Sciences, USTO, Oran 31000, Algeria
2Fakultät für Physik, Universität Bielefeld, D-33615 Bielefeld, Germany

Received 11 September 2007; published 15 February 2008

Using Langevin simulations, we find that simple “generic” bead-and-spring homopolymer chains in a sufficiently bad solvent spontaneously develop helical order during the process of collapsing from an initially stretched conformation. The helix formation is initiated by the unstable modes of the straight chain, which drive the system towards a long-lived metastable transient state. The effect is most pronounced if hydrodynamic interactions are screened.

© 2008 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevE.77.020802
DOI:
10.1103/PhysRevE.77.020802
PACS:
36.20.Ey, 82.37.−j, 87.15.H−