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Phys. Rev. E 74, 010903(R) (2006) [4 pages]

Characteristic length scale of electric transport properties of genomes

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C. T. Shih
Department of Physics, Tunghai University, Taichung, Taiwan

Received 4 October 2005; published 25 July 2006

A tight-binding model together with a statistical method are used to investigate the relation between the sequence-dependent electric transport properties and the sequences of protein-coding regions of complete genomes. A correlation parameter Ω is defined to analyze the relation. For some particular propagation length wmax, the transport behaviors of the coding and noncoding sequences are very different and the correlation reaches its maximal value Ωmax. wmax and Ωmax are characteristic values for each species. A possible reason for the difference between the features of transport properties in the coding and noncoding regions is the mechanism of DNA damage repair processes together with natural selection.

© 2006 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevE.74.010903
DOI:
10.1103/PhysRevE.74.010903
PACS:
87.15.Aa, 87.14.Gg, 72.80.Le