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Phys. Rev. E 71, 012901 (2005) [3 pages]

Self-similarity and protein chains

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M. A. Moret1,2, J. G. V. Miranda3, E. Nogueira, Jr.3, M. C. Santana2, and G. F. Zebende1,2
1CEPPEV, Fundação Visconde de Cairu, 40226-900 Salvador, BA, Brazil
2Departamento de Física, UEFS, 44031-460 Feira de Santana, Bahia, Brazil
3Instituto de Física, UFBA, 40210-340 Salvador, Bahia, Brazil

Received 13 January 2004; revised 16 November 2004; published 27 January 2005

Fractal properties of 5526 different protein chains are investigated. Characteristic fractal behavior for different molecular systems is obtained from the fractal dimension analysis, which shows that the dimension is δ=2.47. This dimension gives a measure of the protein compactness. The present finding indicates that the fractal analysis describes some structural properties of proteins and corroborates the explanation about multifractality in the energy hypersurface.

© 2005 The American Physical Society

URL:
http://link.aps.org/doi/10.1103/PhysRevE.71.012901
DOI:
10.1103/PhysRevE.71.012901
PACS:
87.14.Ee, 05.45.Df, 87.15.Aa, 02.50.−r